Druet T. & Gautier M. 2022. A hidden Markov model to estimate homozygous-by-descent probabilities associated with nested layers of ancestors. Theoretical Population Biology 145 : 38-51. (https://dx.doi.org/10.1016/j.tpb.2022.03.001)

Gautier M., Vitalis R., Flori L. & Estoup A. 2022. ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat. Molecular Ecology Resources 22 : 1394-1416. (https://dx.doi.org/10.1111/1755-0998.13557)

Klassmann A. & Gautier M. 2022. Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data. PLoS ONE 17 : e0262024. (https://dx.doi.org/10.1371/journal.pone.0262024)

Magnier J., Druet T., Naves M., Ouvrard M., Raoul S., Janelle J., Moazami-Goudarzi K., Lesnoff M., Tillard E., Gautier M. & Flori L. 2022. The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean. G3 Genes, Genomes, Genetics 12 : jkac029. (https://dx.doi.org/10.1093/g3journal/jkac029)

Olazcuaga* L., Foucaud J., Deschamps C., Loiseau A., Claret J.-L., Vedovato R., Guilhot* R., Sevely C., Gautier M., Hufbauer R.A., Rode N.O. & Estoup A. 2022. Rapid and transient evolution of local adaptation to seasonal host fruits in an invasive pest fly. Evolution Letters 6 : 490-505. (https://dx.doi.org/10.1002/evl3.304)

Bogaerts‐Márquez M., Guirao‐Rico S., Gautier M. & González J. 2021. Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster. Molecular Ecology 30 : 938-954. (https://dx.doi.org/10.1111/mec.15783)

Collin F.D., Durif G., Raynal L., Lombaert E., Gautier M., Vitalis R., Marin J.M. & Estoup A. 2021. Extending approximate Bayesian computation with supervised machine learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest. Molecular Ecology Resources 21 : 2598-2613. (https://dx.doi.org/10.1111/1755-0998.13413)

Mérel V., Gibert P., Buch I., Rodriguez Rada V., Estoup A., Gautier M., Fablet M., Boulesteix M., Vieira C. & Arkhipova I. 2021. The worldwide invasion of Drosophila suzukii is accompanied by a large increase of transposable element load and a small number of putatively adaptive insertions. Molecular Biology and Evolution 38 : 4252-4267. (https://dx.doi.org/10.1093/molbev/msab155)

Olazcuaga* L., Foucaud J., Gautier M., Deschamps C., Loiseau A., Leménager N., Facon B., Ravigné V., Hufbauer R.A., Estoup A. & Rode N.O. 2021. Adaptation and correlated fitness responses over two time scales in Drosophila suzukii populations evolving in different environments. Journal of Evolutionary Biology 34 : 1225-1240. (https://dx.doi.org/10.1111/jeb.13878)

Rasplus J.-Y., Rodriguez L.J., Sauné L., Peng Y.Q., Bain A., Kjellberg F., Harrison R.D., Pereira R.A.S., Ubaidillah R., Tollon‐Cordet C., Gautier M., Rossi J.-P. & Cruaud A. 2021. Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae). Cladistics 37 : 402-422. (https://dx.doi.org/10.1111/cla.12443)