Camus* L., Rode N.O., Serga S., Loiseau A., Chen X., Iampietro C., Kenis M., Marande W., Mensch J., Parinello H., Savic Veselinovic M., Valiere S., Zhang J., Estoup A., Boitard S. & Gautier M. 2025. Adaptive challenges of past and future invasion of Drosophila suzukii: insights from novel genomic resources and statistical methods combining individual and pool sequencing data. Molecular Ecology 34 : e70192. (https://dx.doi.org/10.1111/mec.70192)

Soubeyrand S., Estoup A., Cruaud A., Malembic-Maher S., Meynard C., Ravigné V., Barbier M., Barrès B., Berthier K., Boitard S., Dallot S., Gaba S., Grosdidier M., Hannachi M., Jacques M.A., Leclerc M., Lucas P., Martinetti D., Mougel C., Robert C., Roques A., Rossi J.-P., Suffert F., Abad P., Auger-Rozenberg M.-A., Ay J.S., Bardin M., Bernard H., Bohan D.A., Candresse T., Castagnone-Sereno P., Danchin E.G.J., Delmas C.E.L., Ezanno P., Fabre F., Facon B., Gabriel E., Gaudin J., Gauffre B., Gautier M., Guinat C., Lavigne C., Lemaire O., Martinez C., Michel L., Moury B., Nam K., Nédellec C., Ogliastro M., Papaïx J., Parisey N., Poggi S., Radici A., Rasplus J.-Y., Reboud X., Robin C., Roche M., Rusch A., Sauvion N., Streito J.-C., Verdin E., Walker A.S., Xuéreb A., Thébaud G. & Morris C.E. 2024. Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence. CABI Agriculture and Bioscience 5 : 72. (https://dx.doi.org/10.1186/s43170-024-00273-8)

Gautier M., Vitalis R., Flori L. & Estoup A. 2022. ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat. Molecular Ecology Resources 22 : 1394-1416. (https://dx.doi.org/10.1111/1755-0998.13557)

Olazcuaga* L., Foucaud J., Deschamps C., Loiseau A., Claret J.-L., Vedovato R., Guilhot* R., Sevely C., Gautier M., Hufbauer R.A., Rode N.O. & Estoup A. 2022. Rapid and transient evolution of local adaptation to seasonal host fruits in an invasive pest fly. Evolution Letters 6 : 490-505. (https://dx.doi.org/10.1002/evl3.304)

Ulmer R., Couty A., Eslin P., Catterou M., Baliteau L., Bonis A., Borowiec N., Colinet H., Delbac L., Dubois F., Estoup A., Froissard J., Gallet‐Moron E., Gard B., Georges R., Gibert P., Le Goff I., Lemauviel‐Lavenant S., Loucougaray G., Michelot‐Antalik A., Odoux J.F., Pincebourde S., Rode N.O., Thaon M., Till‐Bottraud I. & Chabrerie O. 2022. Macroecological patterns of fruit infestation rates by the invasive fly Drosophila suzukii in the wild reservoir host plant Sambucus nigra. Agricultural and Forest Entomology 24 : 548-563. (https://dx.doi.org/10.1111/afe.12520)

Collin F.D., Durif G., Raynal L., Lombaert E., Gautier M., Vitalis R., Marin J.M. & Estoup A. 2021. Extending approximate Bayesian computation with supervised machine learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest. Molecular Ecology Resources 21 : 2598-2613. (https://dx.doi.org/10.1111/1755-0998.13413)

Foucaud J., Hufbauer R., Ravigné V., Olazcuaga* L., Loiseau A., Ausset A., Wang S., Zang L.-S., Leménager N., Tayeh A., Weyna A., Gneux P., Bonnet E., Dreuilhe V., Poutout B., Estoup A. & Facon B. 2021. How do invasion syndromes evolve? An experimental evolution approach using the ladybirdbug Harmonia axyridis. Peer Community Journal : e33. (https://dx.doi.org/10.24072/pcjournal.32)

Mérel V., Gibert P., Buch I., Rodriguez Rada V., Estoup A., Gautier M., Fablet M., Boulesteix M., Vieira C. & Arkhipova I. 2021. The worldwide invasion of Drosophila suzukii is accompanied by a large increase of transposable element load and a small number of putatively adaptive insertions. Molecular Biology and Evolution 38 : 4252-4267. (https://dx.doi.org/10.1093/molbev/msab155)

Olazcuaga* L., Foucaud J., Gautier M., Deschamps C., Loiseau A., Leménager N., Facon B., Ravigné V., Hufbauer R.A., Estoup A. & Rode N.O. 2021. Adaptation and correlated fitness responses over two time scales in Drosophila suzukii populations evolving in different environments. Journal of Evolutionary Biology 34 : 1225-1240. (https://dx.doi.org/10.1111/jeb.13878)

Chapuis M.-P., Raynal L., Plantamp C., Meynard C., Blondin L., Marin J.M. & Estoup A. 2020. A young age of subspecific divergence in the desert locust inferred by ABC Random Forest. Molecular Ecology 29 : 4542-4558. (https://dx.doi.org/10.1111/mec.15663)