The main focus of my research is the analysis of viral diversity in hantaviruses and the evolutionary processes that shape it. The availability of an increasing number of viral genome sequences, thanks to new high-throughput sequencing (NGS) techniques, now provides us with a wealth of genetic information on these viruses. In particular, I use phylogenetic and phylogeographic approaches to study and trace the evolutionary history of these viruses, their origin and spread, and to establish their mode of transmission.
The aim of my research is to characterise the distribution and genetic diversity of these zoonotic viruses transmitted by rodents, which cause haemorrhagic fevers with renal syndrome in humans, and to identify the biological and/or environmental factors that influence the evolution of the virus. Our fieldwork is carried out in France and Africa, where the circulation of these viruses remains poorly understood. A better understanding of these mechanisms will enable us to better predict their spread and, ultimately, to develop more appropriate prevention policies.
Keywords: viral zoonoses, hantaviruses, phylogeny, small mammals