LEBLOIS Raphael
raphael.leblois@inrae.fr
+33 4 99 62 33 31

Raphaël LEBLOIS

Research Manager, INRAE

Area(s)

Collective responsibility(ies)

Sustainable Development Coordinator

My research focuses primarily on methodological developments in population genetics concerning the inference of demographic and historical parameters from genetic data in natural and agronomic populations. I am particularly interested in demographic processes at small geographical and temporal scales, i.e. local and current or relatively recent, notably the estimation of dispersal characteristics and densities at the landscape scale. Having worked on inferences using F-statistics, then maximum likelihood, we are currently focusing on the use of simulation-based inference methods that allow us to consider models more relevant at these fine scales, for example with small (sub-)population sizes (or no sub-populations at all for distance-based isolation models in continuous habitats with one individual per network node). More recently, I have begun to take an interest in adaptive processes through the inference of adaptive introgression processes.

 

Keywords: population genetics/genomics, statistical inference, demographic history, dispersal, continuous habitat, subpopulation, simulation-based inference.

Last publications
Charbonnel* E., Benoit L., Nidelet S., Ortega-Abboud E., Gschloessl B., Leblois R., Ouvrard D. & Chapuis M.-P. 2025. Optimization and evaluation of the bestRAD sequencing approach: towards ascertainment of the invasion routes of the oriental fruit fly, Bactrocera dorsalis. Molecular Ecology Resources 25 : e14114. (https://dx.doi.org/10.1111/1755-0998.14114)
Hobolth A., Boitard S., Futschik A. & Leblois R. 2025. A matrix-analytical sampling formula for time-homogeneous coalescent processes under the infinite sites mutation model. Theoretical Population Biology 163 : 62-79. (https://dx.doi.org/10.1016/j.tpb.2025.03.002)
Muller* T., Gautier M., Lombaert É., Leblois R., Sauné L., Branco M., Kerdelhué C. & Perrier C. 2025. Population Genomics of Incipient Allochronic Divergence in the Pine Processionary Moth. Molecular Ecology 34 : e70189. (https://dx.doi.org/10.1111/mec.70189)
Romieu* J., Camarata G., Crochet P.-A., de Navascués M., Leblois R. & Rousset F. 2025. Performance evaluation of adaptive introgression classification methods. Peer Community Journal 5 : e95. (https://dx.doi.org/10.24072/pcjournal.617)
Horaud M., Arizmendi-Meija R., Nebot-Colomer E., López-Sendino P., Antunes A., Dellicour S., Viard F., Leblois R., Linares C., Garrabou J. & Ledoux J.-B. 2024. Comparative population genetics of habitat-forming octocorals in two marine protected areas: eco-evolutionary and management implications. Conservation Genetics 25 : 319-334. (https://dx.doi.org/10.1007/s10592-023-01573-8)
Doniol‐Valcroze P., Rancilhac L., Brito J.C., Miralles A., Geniez P., Benoit L., Loiseau A., Leblois R., Dufresnes C. & Crochet P.A. 2023. Combining RADseq and contact zone analysis to decipher cryptic diversification in reptiles: Insights from the spiny‐footed lizard (Reptilia, Lacertidae). Zoologica Scripta 53 : 1-15. (https://dx.doi.org/10.1111/zsc.12628)
Fay R., Ficheux S., Béchet A., Besnard A., Crochet P.A., Leblois R., Crivelli A., Wattier R. & Olivier A. 2023. Direct and indirect estimates of dispersal support strong juvenile philopatry and male‐biased dispersal in a freshwater turtle species (Emys orbicularis). Freshwater Biology 68 : 2042-2053. (https://dx.doi.org/10.1111/fwb.14171)
Rancilhac L., Miralles A., Geniez P., Mendez-Aranda D., Beddek M., Brito J.C., Leblois R. & Crochet P.-A. 2023. Phylogeographic breaks and how to find them: An empirical attempt at separating vicariance from isolation by distance in a lizard with restricted dispersal. Peer Community Journal 3 : e74. (https://dx.doi.org/10.24072/pcjournal.301)
Charbonnel E., Daguin-Thiebaut C., Caradec L., Moittie E., Gilg O., Gavrilo M.V., Strom H., Mallory M.L., Morrison R.I.G., Gilchrist H.G., Leblois R., Roux C., Yearsley J.M., Yannic G. & Broquet T. 2022. Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations. Heredity 128 : 364-376. (https://dx.doi.org/10.1038/s41437-022-00515-3)
Gauffre B., Boissinot A., Quiquempois V., Leblois R., Grillet P., Morin S., Picard D., Ribout C. & Lourdais O. 2022. Agricultural intensification alters marbled newt genetic diversity and gene flow through density and dispersal reduction. Molecular Ecology 31 : 119-133. (https://dx.doi.org/10.1111/mec.16236)