PIRY S - cbgp

sylvain.piry@inrae.fr

All members

Sylvain PIRY

Research engineer, INRAE

Area(s)

Ecology and evolution of zoonoses

Technical platform(s)

Calculation & data management

Collective responsibility(ies)

Operational manager TP Calculation

I create computing solutions all along the data production, processing and analysis, from the fied to spatial molecular analysis. This process includes in-the-field data capture, databases up to HTS processing, spatial genetics data analysis, remote-sensing, deep-learning … and biology.

Keywords: spatial databases, landscape genetics, software development, bioinformatics

Pradel J., Bouilloud* M., Loiseau A., Piry S., Galan M., Artige E., Castel G., Ferrero J., Gallet R., Thuel G., Vieira N. & Charbonnel N. 2022. Small terrestrial mammals (Rodentia and Soricomorpha) along a gradient of forest anthropisation (reserves, managed forests, urban parks) in France. Biodiversity Data Journal 10 : e95214. (https://dx.doi.org/10.3897/BDJ.10.e95214)

Stragier C., Piry S., Loiseau A., Kane M., Sow A., Niang Y., Diallo M., Ndiaye A., Gauthier P., Borderon M., Granjon L., Brouat C. & Berthier K. 2022. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa). Peer Community Journal 2 : e11. (https://dx.doi.org/10.1101/557066)

Vulin J., Murri S., Madrières* S., Galan M., Tatard C., Piry S., Vaccari G., D’Agostino C., Charbonnel N., Castel G. & Marianneau P. 2021. Isolation and genetic characterization of Puumala Orthohantavirus strains from France. Pathogens 10 : 349. (https://dx.doi.org/10.3390/pathogens10030349)

Tournayre* O., Leuchtmann M., Galan M., Trillat M., Piry S., Pinaud D., Filippi‐Codaccioni O., Pontier D. & Charbonnel N. 2021. eDNA metabarcoding reveals a core and secondary diets of the greater horseshoe bat with strong spatio‐temporal plasticity. Environmental DNA 3 : 277-296. (https://dx.doi.org/10.1002/edn3.167)

Granjon L., Fossati‐Gaschignard O., Artige E., Bâ K., Brouat C., Dalecky A., Diagne C.A., Diallo M., Gauthier P., Handschumacher P., Kane M., Husse L., Niang Y., Piry S., Sarr N., Sow A. & Duplantier J.M. 2021. Commensal small mammal trapping data in Southern Senegal, 2012–2015: where invasive species meet native ones. Ecology 102 : e03470. (https://dx.doi.org/10.1002/ecy.3470)

Hamidovitch A., Etougbétché* J., Tonouhéwa A.B.N., Galal L., Dobigny G., Houéménou G., Da Zoclanclounon H., Amagbénon R., Laléyè A., Fiévet N., Piry S., Berthier K., Pena H.F.J., Dardé M.L. & Mercier A. 2021. A hotspot of Toxoplasma gondii Africa 1 lineage in Benin: how new genotypes from West Africa contribute to understand the parasite diversity worldwide. PLoS Neglected Tropical Diseases 15 : e0008980. (https://dx.doi.org/10.1371/journal.pntd.0008980)

Stragier C., Piry S., Loiseau A., Kane M., Sow A., Niang Y., Diallo M., Ndiaye A., Gauthier P., Borderon M., Granjon L., Brouat C. & Berthier K. 2020. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa). PCI Ecology bioRxiv 557066, ver 4 : peer-reviewed and recommended by PCI Ecology. ((http://dx.doi.org/10.1101/557066)

Tournayre O., Leuchtmann M., Filippi-Codaccioni O., Trillat M., Piry S., Pontier D., Charbonnel N. & Galan M. 2020. In silico and empirical evaluation of twelve metabarcoding primer sets for insectivorous diet analyses. Ecology and Evolution 10 : 6310-6332. (https://dx.doi.org/10.1002/ece3.6362)

Murri S., Madrières S., Tatard C., Piry S., Benoit L., Loiseau A., Pradel J., Artige E., Audiot P., Leménager N., Lacôte S., Vulin J., Charbonnel N., Marianneau P. & Castel G. 2020. Detection and genetic characterization of Puumala Orthohantavirus S-segment in areas of France non-endemic for Nephropathia Epidemica. Pathogens 9 : 721. (https://dx.doi.org/10.3390/pathogens9090721)

Madrières S., Tatard C., Murri S., Vulin J., Galan M., Piry S., Pulido C., Loiseau A., Artige E., Benoit L., Leménager N., Lakhdar L., Charbonnel N., Marianneau P. & Castel G. 2020. How bank vole-PUUV interactions influence the eco-evolutionary processes driving nephropathia epidemica epidemiology—an experimental and genomic approach. Pathogens 9 : 789. (https://dx.doi.org/10.3390/pathogens9100789)