PIRY S - cbgp

sylvain.piry@inrae.fr

+33 4 99 62 33 18

Tous les membres

Sylvain PIRY

Ingénieur de recherche, INRAE

Axe(s)

Écologie et évolution des zoonoses

Plateau(x) technique(s)

Calcul & gestion des données

Responsabilité(s) collective(s)

Responsable opérationnel PT Calcul

I create computing solutions all along the data production, processing and analysis, from the fied to spatial molecular analysis. This process includes in-the-field data capture, databases up to HTS processing, spatial genetics data analysis, remote-sensing, deep-learning … and biology.

Mots-clés : spatial databases, landscape genetics, software development, bioinformatics

Gaudin J., Piry S., Wipf-Scheibel C., Szadkowski M., Desbiez C., Nguyen E., Dumeaux P., Berthier K., Schoeny A., Girardot G., Hirsch J., Verdin E., Lepage E., Gognalons P., Troulet C., Moury B. & Rimbaud L. 2025. Outbreak of cucumber mosaic virus subgroup IB in pepper from the Espelette area (Basque Country, southwestern France) and first report of five taxa as natural hosts of CMV. Plant Disease 109 : 983-987. (https://dx.doi.org/10.1094/PDIS-07-24-1553-SC)

Penel* B., Meynard C.N., Benoit L., Bourdonné A., Clamens A.-L., Soldati L., Migeon A., Chapuis M.-P., Piry S., Kergoat G.J. & Haran J. 2025. The best of two worlds: toward large-scale monitoring of biodiversity combining COI metabarcoding and optimized parataxonomic validation. Ecography 2025 : e07699. (https://dx.doi.org/10.1111/ecog.07699)

Caumette* C., Diatta P., Piry S., Chapuis M.-P., Faye E., Sigrist F., Martin O., Papaïx J., Brévault T. & Berthier K. 2024. Hierarchizing multi-scale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards. Peer Community Journal 4 : e65. (https://dx.doi.org/10.24072/pcjournal.438)

Granjon L., Artige E., Ba K., Brouat C., Dalecky A., Diagne C., Diallo M., Fossati-Gaschignard O., Gauthier P., Kane M., Husse L., Niang Y., Piry S., Sarr N., Sow A. & Duplantier J.-M. 2023. Sharing space between native and invasive small mammals: Study of commensal communities in Senegal. Ecology and Evolution 13 : e10539. (https://dx.doi.org/10.1002/ece3.10539)

Pradel J., Bouilloud* M., Loiseau A., Piry S., Galan M., Artige E., Castel G., Ferrero J., Gallet R., Thuel G., Vieira N. & Charbonnel N. 2022. Small terrestrial mammals (Rodentia and Soricomorpha) along a gradient of forest anthropisation (reserves, managed forests, urban parks) in France. Biodiversity Data Journal 10 : e95214. (https://dx.doi.org/10.3897/BDJ.10.e95214)

Stragier C., Piry S., Loiseau A., Kane M., Sow A., Niang Y., Diallo M., Ndiaye A., Gauthier P., Borderon M., Granjon L., Brouat C. & Berthier K. 2022. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa). Peer Community Journal 2 : e11. (https://dx.doi.org/10.24072/pcjournal.85)

Granjon L., Fossati‐Gaschignard O., Artige E., Bâ K., Brouat C., Dalecky A., Diagne C.A., Diallo M., Gauthier P., Handschumacher P., Kane M., Husse L., Niang Y., Piry S., Sarr N., Sow A. & Duplantier J.M. 2021. Commensal small mammal trapping data in Southern Senegal, 2012–2015: where invasive species meet native ones. Ecology 102 : e03470. (https://dx.doi.org/10.1002/ecy.3470)

Hamidović A., Etougbétché* J.R., Tonouhewa A.B.N., Galal L., Dobigny G., Houemenou G., Da Zoclanclounon H., Amagbegnon R., Laleye A., Fievet N., Piry S., Berthier K., Pena H.F.J., Darde M.L. & Mercier A. 2021. A hotspot of Toxoplasma gondii Africa 1 lineage in Benin: How new genotypes from West Africa contribute to understand the parasite genetic diversity worldwide. PLoS Neglected Tropical Diseases 15 : e0008980. (https://dx.doi.org/10.1371/journal.pntd.0008980)

Larson S., Gagne R., B., Bodkin J., Murray M., J., Ralls K., Bowen L., Leblois R., Piry S., Penedo M.C., Tinker M.T. & Ernest H., B. 2021. Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris. Marine Mammal Science 37 : 1475-1497. (https://dx.doi.org/10.1111/mms.12841)

Tournayre* O., Leuchtmann M., Galan M., Trillat M., Piry S., Pinaud D., Filippi‐Codaccioni O., Pontier D. & Charbonnel N. 2021. eDNA metabarcoding reveals a core and secondary diets of the greater horseshoe bat with strong spatio‐temporal plasticity. Environmental DNA 3 : 277-296. (https://dx.doi.org/10.1002/edn3.167)