PIRY S - cbgp

sylvain.piry@inrae.fr

Tous les membres

Sylvain PIRY

Ingénieur de recherche, INRAE

Axe(s)

Écologie et évolution des zoonoses

Plateau(x) technique(s)

Calcul & gestion des données

Responsabilité(s) collective(s)
Responsable opérationnel PT Calcul

I create computing solutions all along the data production, processing and analysis, from the fied to spatial molecular analysis. This process includes in-the-field data capture, databases up to HTS processing, spatial genetics data analysis, remote-sensing, deep-learning … and biology.

Mots-clés : spatial databases, landscape genetics, software development, bioinformatics

Pradel J., Bouilloud* M., Loiseau A., Piry S., Galan M., Artige E., Castel G., Ferrero J., Gallet R., Thuel G., Vieira N. & Charbonnel N. 2022. Small terrestrial mammals (Rodentia and Soricomorpha) along a gradient of forest anthropisation (reserves, managed forests, urban parks) in France. Biodiversity Data Journal 10 : e95214. (https://dx.doi.org/10.3897/BDJ.10.e95214)

Stragier C., Piry S., Loiseau A., Kane M., Sow A., Niang Y., Diallo M., Ndiaye A., Gauthier P., Borderon M., Granjon L., Brouat C. & Berthier K. 2022. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa). Peer Community Journal 2 : e11. (https://dx.doi.org/10.1101/557066)

Granjon L., Fossati‐Gaschignard O., Artige E., Bâ K., Brouat C., Dalecky A., Diagne C.A., Diallo M., Gauthier P., Handschumacher P., Kane M., Husse L., Niang Y., Piry S., Sarr N., Sow A. & Duplantier J.M. 2021. Commensal small mammal trapping data in Southern Senegal, 2012–2015: where invasive species meet native ones. Ecology 102 : e03470. (https://dx.doi.org/10.1002/ecy.3470)

Hamidovitch A., Etougbétché* J., Tonouhéwa A.B.N., Galal L., Dobigny G., Houéménou G., Da Zoclanclounon H., Amagbénon R., Laléyè A., Fiévet N., Piry S., Berthier K., Pena H.F.J., Dardé M.L. & Mercier A. 2021. A hotspot of Toxoplasma gondii Africa 1 lineage in Benin: how new genotypes from West Africa contribute to understand the parasite diversity worldwide. PLoS Neglected Tropical Diseases 15 : e0008980. (https://dx.doi.org/10.1371/journal.pntd.0008980)

Tournayre* O., Leuchtmann M., Galan M., Trillat M., Piry S., Pinaud D., Filippi‐Codaccioni O., Pontier D. & Charbonnel N. 2021. eDNA metabarcoding reveals a core and secondary diets of the greater horseshoe bat with strong spatio‐temporal plasticity. Environmental DNA 3 : 277-296. (https://dx.doi.org/10.1002/edn3.167)

Vulin J., Murri S., Madrières* S., Galan M., Tatard C., Piry S., Vaccari G., D’Agostino C., Charbonnel N., Castel G. & Marianneau P. 2021. Isolation and genetic characterization of Puumala Orthohantavirus strains from France. Pathogens 10 : 349. (https://dx.doi.org/10.3390/pathogens10030349)

Desbiez C., Wipf-Scheibel C., Millot P., Berthier K., Girardot G., Gognalons P., Hirsch J., Moury B., Nozeran K., Piry S., Schoeny A. & Verdin E. 2020. Distribution and evolution of the major viruses infecting cucurbitaceous and solanaceous crops in the French Mediterranean area. Virus Research 286 : 198042. (https://dx.doi.org/10.1016/j.virusres.2020.198042)

Madrières S., Tatard C., Murri S., Vulin J., Galan M., Piry S., Pulido C., Loiseau A., Artige E., Benoit L., Leménager N., Lakhdar L., Charbonnel N., Marianneau P. & Castel G. 2020. How bank vole-PUUV interactions influence the eco-evolutionary processes driving nephropathia epidemica epidemiology—an experimental and genomic approach. Pathogens 9 : 789. (https://dx.doi.org/10.3390/pathogens9100789)

Murri S., Madrières S., Tatard C., Piry S., Benoit L., Loiseau A., Pradel J., Artige E., Audiot P., Leménager N., Lacôte S., Vulin J., Charbonnel N., Marianneau P. & Castel G. 2020. Detection and genetic characterization of Puumala Orthohantavirus S-segment in areas of France non-endemic for Nephropathia Epidemica. Pathogens 9 : 721. (https://dx.doi.org/10.3390/pathogens9090721)

Stragier C., Piry S., Loiseau A., Kane M., Sow A., Niang Y., Diallo M., Ndiaye A., Gauthier P., Borderon M., Granjon L., Brouat C. & Berthier K. 2020. Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa). PCI Ecology bioRxiv 557066, ver 4 : peer-reviewed and recommended by PCI Ecology. ((http://dx.doi.org/10.1101/557066)